Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2162Hypothetical protein. (139 aa)    
Predicted Functional Partners:
RMCC_2867
Hypothetical protein.
  
     0.760
RMCC_2161
Hydrolase, peptidase M42 family protein.
       0.732
RMCC_2367
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein.
  
  
  0.641
RMCC_6199
Ring hydroxylating enzyme beta subunit.
  
     0.625
RMCC_2794
Flavoprotein.
  
  
  0.620
RMCC_3293
Hypothetical protein.
 
    0.613
RMCC_6406
Conserved membrane protein of unknown function, alanine and leucine rich transmembrane protein.
  
     0.584
RMCC_1614
CoA-transferase subunit beta.
  
     0.582
RMCC_2160
GNAT family acetyltransferase.
       0.579
RMCC_2159
Asparagine synthase, glutamine-hydrolyzing.
       0.573
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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