Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2167Beta-lactamase class A. (314 aa)    
Predicted Functional Partners:
RMCC_3309
Transmembrane protein.
  
     0.697
RMCC_2810
Von Willebrand factor, type A.
  
     0.691
RMCC_3568
Hypothetical protein.
  
     0.682
RMCC_2052
Uncharacterized protein.
  
     0.667
RMCC_3407
NLP/P60 protein.
 
     0.656
RMCC_5066
Esterase.
  
     0.641
RMCC_3695
Lipoprotein lprB.
 
     0.636
RMCC_6360
Erp protein.
  
     0.627
RMCC_4584
Esterase.
  
     0.623
RMCC_3532
Hypothetical protein.
  
     0.610
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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