Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCC_2178Extracellular solute-binding protein. (338 aa)    
Predicted Functional Partners:
RMCC_2177
ABC-type Fe3+ transport system, permease component.
 
 
 0.997
fbpC
ABC-type spermidine/putrescine transport system, ATPase component; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.992
RMCC_2175
AMP-dependent synthetase and ligase.
 
     0.909
RMCC_6653
2-aminoethylphosphonate transport system permease PhnU.
 
  
  0.704
RMCC_2179
Uncharacterized protein.
       0.603
RMCC_2180
Ubiquitin carboxyl-terminal hydrolase.
       0.603
RMCC_6652
ABC transporter permease.
 
  
  0.598
RMCC_2498
Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.557
potA
Spermidine/putrescine ABC transporter ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.557
RMCC_5170
ABC transporter-like protein.
  
 
 0.557
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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