STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2178Extracellular solute-binding protein. (338 aa)    
Predicted Functional Partners:
RMCC_2177
ABC-type Fe3+ transport system, permease component.
 
 0.998
fbpC
ABC-type spermidine/putrescine transport system, ATPase component; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 0.996
RMCC_2175
AMP-dependent synthetase and ligase.
 
     0.912
RMCC_6653
2-aminoethylphosphonate transport system permease PhnU.
 
  
  0.726
RMCC_2498
Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.657
potA
Spermidine/putrescine ABC transporter ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.657
RMCC_5170
ABC transporter-like protein.
  
 
 0.657
RMCC_5281
Spermidine/putrescine ABC transporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 
 0.657
RMCC_5376
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.657
RMCC_6775
Sulfate/thiosulfate import ATP-binding protein CysA 2; Belongs to the ABC transporter superfamily.
 
 
 0.657
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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