Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RMCC_2188Mycobactin utilization protein viuB. (287 aa)    
Predicted Functional Partners:
RMCC_2189
L-lactate 2-monooxygenase.
       0.801
RMCC_1017
Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase.
 
  
 0.783
RMCC_1019
ABC transporter ATPase/permease.
   
 0.751
RMCC_1016
Phenyloxazoline synthase mbtB.
 
  
 0.720
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.703
RMCC_1956
ABC transporter ATP-binding protein/permease.
  
 0.683
bphD
Alpha/beta hydrolase fold protein.
       0.667
RMCC_0644
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
 
 0.603
RMCC_1948
Ferric enterobactin ABC transporter, permease protein FepG; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.585
RMCC_1950
ABC transporter substrate-binding protein.
 
 
 0.568
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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