STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2188Mycobactin utilization protein viuB. (287 aa)    
Predicted Functional Partners:
RMCC_2189
L-lactate 2-monooxygenase.
       0.804
RMCC_1016
Phenyloxazoline synthase mbtB.
 
  
 0.709
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.707
RMCC_1017
Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase.
 
  
 0.694
bphD
Alpha/beta hydrolase fold protein.
       0.667
RMCC_0644
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
  
 0.534
RMCC_2185
Nucleotide binding protein.
       0.522
RMCC_2184
Mg chelatase-like protein.
       0.520
RMCC_2187
Short-chain dehydrogenase.
       0.500
RMCC_1010
lysine-N-oxygenase mbtG.
 
  
 0.497
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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