Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bphDAlpha/beta hydrolase fold protein. (296 aa)    
Predicted Functional Partners:
pks5-2
Polyketide synthase pks5.
  
 0.858
RMCC_6601
Beta-ketoacyl synthase.
  
 0.858
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.784
RMCC_2189
L-lactate 2-monooxygenase.
    
  0.732
RMCC_3195
Non-heme haloperoxidase hpx.
  
     0.711
RMCC_6372
Polyketide synthase pks13.
  
 0.708
RMCC_1013
Polyketide synthetase mbtD.
  
 0.690
RMCC_6826
Alpha/beta hydrolase.
  
     0.687
RMCC_2188
Mycobactin utilization protein viuB.
       0.667
RMCC_5267
Putative hydrolase.
  
     0.667
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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