Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2255Conserved alanine rich protein. (168 aa)    
Predicted Functional Partners:
RMCC_2256
Uncharacterized protein.
 
    0.911
RMCC_1446
Protein of unknown function.
  
     0.738
RMCC_3947
Protein of unknown function.
  
     0.725
RMCC_5587
Chorismate mutase.
  
     0.653
RMCC_2358
Uncharacterized protein.
  
     0.643
RMCC_3399
Integral membrane protein.
  
     0.641
RMCC_1703
Protein of unknown function.
  
     0.629
RMCC_5357
RNA polymerase sigma-70 factor.
  
     0.624
rimP
Ribosome maturation protein RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.610
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination.
       0.610
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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