STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2269Oxidoreductase, zinc-binding dehydrogenase. (362 aa)    
Predicted Functional Partners:
RMCC_2268
Carbohydrate kinase FGGY; Belongs to the FGGY kinase family.
 
  
  0.905
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.863
RMCC_2267
DeoR family transcriptional regulator.
 
     0.835
RMCC_2266
Ribose transport ATP-binding protein RbsA.
  
 
  0.818
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
 
  0.785
RMCC_2265
ABC-type sugar transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.778
RMCC_5921
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
    
 0.777
RMCC_6769
PTS system D-fructose-specific IIABC component (F1P-forming), Frc family.
  
 
 0.776
RMCC_3900
Ribokinase sugar kinase.
  
 
 0.754
RMCC_6210
Alcohol dehydrogenase GroES domain-containing protein.
  
  
 
0.733
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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