STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2280Transcriptional repressor sirR. (233 aa)    
Predicted Functional Partners:
RMCC_0438
TetR family transcriptional regulator.
   
    0.764
RMCC_6073
RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family.
  
    0.764
cobB-3
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.757
RMCC_0293
Regulatory protein.
   
    0.754
RMCC_4120
Transcriptional regulator.
   
    0.754
RMCC_4395
DNA-binding transcriptional activator.
   
    0.754
RMCC_3571
Transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.752
RMCC_6697
Regulatory proteins IclR.
   
    0.743
RMCC_1661
ABC transporter-like protein.
  
 
 0.738
RMCC_1660
ABC-3 protein.
  
 
 0.733
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.