STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2290Putative uncharacterized protein. (256 aa)    
Predicted Functional Partners:
RMCC_2289
NAD dependent epimerasedehydratase family protein.
       0.782
RMCC_0214
Zn-ribbon protein, possibly nucleic acid-binding protein.
    
   0.692
RMCC_6207
Glutamate decarboxylase gadB; Belongs to the group II decarboxylase family.
    
   0.585
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.579
RMCC_2292
Transmembrane protein.
       0.577
RMCC_2293
Flavodoxin-like protein.
  
    0.576
RMCC_4041
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
    0.573
RMCC_6111
Protein of unknown function.
  
     0.569
RMCC_4095
Uncharacterized protein.
  
     0.529
RMCC_4137
Protein of unknown function.
  
   
 0.498
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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