Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_0472 | RMCC_2582 | RMCC_0472 | RMCC_2582 | ERCC4-type nuclease. | ATP-dependent helicase dinG. | 0.875 |
RMCC_0472 | RMCC_2692 | RMCC_0472 | RMCC_2692 | ERCC4-type nuclease. | Uncharacterized protein. | 0.796 |
RMCC_0472 | RMCC_2996 | RMCC_0472 | RMCC_2996 | ERCC4-type nuclease. | 5'-3' exonuclease. | 0.965 |
RMCC_0472 | polA | RMCC_0472 | RMCC_5120 | ERCC4-type nuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.985 |
RMCC_2052 | RMCC_2582 | RMCC_2052 | RMCC_2582 | Uncharacterized protein. | ATP-dependent helicase dinG. | 0.899 |
RMCC_2052 | RMCC_2692 | RMCC_2052 | RMCC_2692 | Uncharacterized protein. | Uncharacterized protein. | 0.835 |
RMCC_2052 | rpoA | RMCC_2052 | RMCC_4245 | Uncharacterized protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.930 |
RMCC_2052 | rpoB | RMCC_2052 | RMCC_4150 | Uncharacterized protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.913 |
RMCC_2052 | rpoZ | RMCC_2052 | RMCC_1218 | Uncharacterized protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.908 |
RMCC_2582 | RMCC_0472 | RMCC_2582 | RMCC_0472 | ATP-dependent helicase dinG. | ERCC4-type nuclease. | 0.875 |
RMCC_2582 | RMCC_2052 | RMCC_2582 | RMCC_2052 | ATP-dependent helicase dinG. | Uncharacterized protein. | 0.899 |
RMCC_2582 | RMCC_2692 | RMCC_2582 | RMCC_2692 | ATP-dependent helicase dinG. | Uncharacterized protein. | 0.972 |
RMCC_2582 | RMCC_2996 | RMCC_2582 | RMCC_2996 | ATP-dependent helicase dinG. | 5'-3' exonuclease. | 0.929 |
RMCC_2582 | polA | RMCC_2582 | RMCC_5120 | ATP-dependent helicase dinG. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.977 |
RMCC_2582 | rpoA | RMCC_2582 | RMCC_4245 | ATP-dependent helicase dinG. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.984 |
RMCC_2582 | rpoB | RMCC_2582 | RMCC_4150 | ATP-dependent helicase dinG. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.984 |
RMCC_2582 | rpoC-2 | RMCC_2582 | RMCC_4149 | ATP-dependent helicase dinG. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.857 |
RMCC_2582 | rpoZ | RMCC_2582 | RMCC_1218 | ATP-dependent helicase dinG. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.985 |
RMCC_2691 | RMCC_2692 | RMCC_2691 | RMCC_2692 | Uncharacterized protein. | Uncharacterized protein. | 0.782 |
RMCC_2692 | RMCC_0472 | RMCC_2692 | RMCC_0472 | Uncharacterized protein. | ERCC4-type nuclease. | 0.796 |
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