STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2784Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. (508 aa)    
Predicted Functional Partners:
RMCC_2785
Membrane-bound C-5 sterol desaturase erg3.
  
 
  0.772
RMCC_2390
Ribonuclease D.
    
  0.705
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.695
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.674
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.665
RMCC_2786
TrkA domain-containing protein.
 
     0.660
RMCC_6819
ATP-dependent helicase HrpA.
    
 0.639
RMCC_4747
Aminopeptidase Y.
  
 0.629
RMCC_4748
Lipoprotein aminopeptidase lpqL.
  
 0.629
RMCC_2788
glycine/D-amino acid oxidase, deaminating.
       0.597
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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