STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2820Transcriptional regulator. (138 aa)    
Predicted Functional Partners:
RMCC_2819
Peptidase M48 Ste24p.
 
 
  0.957
RMCC_3450
Peptidase M48, Ste24p.
 
 
  0.832
RMCC_3428
Zn-dependent protease with chaperone function.
 
 
  0.792
RMCC_4204
Peptidase M48, Ste24p.
 
    0.767
RMCC_2817
Inosine 5-monophosphate dehydrogenase.
       0.753
RMCC_2818
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
       0.702
RMCC_0537
Zn-dependent protease with chaperone function.
 
 
  0.625
RMCC_0538
Putative transcriptional regulator.
  
     0.604
RMCC_2814
Uncharacterized protein.
 
     0.568
RMCC_2821
Ferric iron reductase FhuF-like transporter.
       0.540
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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