STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2873Carboxymuconolactone decarboxylase. (160 aa)    
Predicted Functional Partners:
RMCC_0051
3-carboxy-cis,cis-muconate cycloisomerase.
  
  
  0.883
RMCC_2793
Flavoprotein.
  
     0.725
RMCC_2874
Transmembrane protein.
       0.718
RMCC_2211
TetR family transcriptional regulator.
  
     0.717
RMCC_2871
Bacterioferritin bfrA; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
     
 0.708
RMCC_2872
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
 
     0.699
RMCC_6479
Putative hydrolase.
   
 
  0.697
RMCC_4885
Membrane protein.
  
     0.684
RMCC_0050
4-carboxymuconolactone decarboxylase.
  
 
 0.675
RMCC_6602
Dihydrodipicolinate reductase.
 
     0.673
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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