STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2889Signal peptide protein. (415 aa)    
Predicted Functional Partners:
trpC
Indole-3-glycerol phosphate synthase trpC; Belongs to the TrpC family.
   
    0.746
RMCC_4696
Peptidase M12A astacin.
   
  0.706
RMCC_4365
Thioredoxin domain protein.
    
   0.663
RMCC_1624
Endoglycoceramidase.
    
  0.635
RMCC_3749
Type VII secretion integral membrane protein Ecc D.
    
   0.574
RMCC_4934
ESX-4 secretion system protein EccD4.
    
   0.574
RMCC_0288
Integral membrane protein.
    
   0.573
RMCC_2890
ErfK/YbiS/YcfS/YnhG family protein.
       0.568
RMCC_0869
Cellulase celA1; Belongs to the glycosyl hydrolase family 6.
    
  0.536
RMCC_2888
Amino acid/peptide transporter.
       0.502
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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