STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2893XRE family transcriptional regulator. (260 aa)    
Predicted Functional Partners:
RMCC_4003
Uncharacterized protein.
 
     0.695
RMCC_2892
GntR family transcriptional regulator.
  
    0.687
RMCC_2891
Fatty acid hydroxylase.
       0.681
RMCC_2894
Membrane protein.
       0.561
RMCC_5270
Hypothetical protein.
    
 
 0.559
RMCC_2905
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.531
RMCC_5196
Zn-dependent hydrolase, including glyoxylase.
  
 
  0.477
RMCC_6528
Beta-lactamase domain protein.
  
 
  0.432
RMCC_6150
Metallo-beta-lactamase superfamily protein.
  
 
  0.429
RMCC_0643
Uncharacterized protein.
  
   0.427
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.