STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_28992-nitropropane dioxygenase. (376 aa)    
Predicted Functional Partners:
RMCC_2496
Fatty acid synthase.
  
 
 0.973
pks5-2
Polyketide synthase pks5.
  
 0.875
RMCC_6601
Beta-ketoacyl synthase.
  
 0.875
RMCC_1013
Polyketide synthetase mbtD.
  
 0.845
RMCC_6372
Polyketide synthase pks13.
  
 0.842
RMCC_1561
Lipid-transfer protein.
 
 
  0.697
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.656
RMCC_2520
Fatty acyl-CoA synthetase.
  
 0.614
RMCC_1562
Lipid carrier protein or keto acyl-CoA thiolase ltp3.
 
 
  0.580
RMCC_1924
Acyl carrier protein.
  
 0.567
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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