STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_29236-hydroxy-D-nicotine oxidase. (407 aa)    
Predicted Functional Partners:
RMCC_0273
Ubiquinol-cytochrome C reductase qcrC.
   
  0.804
RMCC_2059
Electron transfer flavoprotein beta subunit fixA.
  
 
 0.706
RMCC_2060
Electron transfer flavoprotein alpha subunit fixB.
  
 
 0.705
RMCC_3966
Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
    
 0.643
RMCC_3883
Oxidoreductase subunit alpha.
    
 0.613
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
 0.610
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
 0.610
RMCC_6363
Transmembrane protein.
    
 0.610
RMCC_6364
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
    
 0.546
atpE
ATP synthase F0 subunit chi; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 
  0.541
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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