STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2995Lactoylglutathione lyase-like lyase. (131 aa)    
Predicted Functional Partners:
RMCC_2994
Dipeptidase pepE; Belongs to the peptidase M24B family.
  
    0.790
RMCC_1124
methylmalonyl-CoA mutase.
    
 0.653
RMCC_1125
methylmalonyl-CoA mutase small subunit mutA.
    
 0.653
pks5-2
Polyketide synthase pks5.
 
 0.575
RMCC_2996
5'-3' exonuclease.
       0.575
RMCC_3883
Oxidoreductase subunit alpha.
     
 0.573
RMCC_6601
Beta-ketoacyl synthase.
  
 0.515
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.492
RMCC_4784
Rhodanese-related sulfurtransferase.
  
 
  0.491
RMCC_0120
Zn-dependent hydrolase.
   
 
  0.455
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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