STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3005Short chain dehydrogenase. (256 aa)    
Predicted Functional Partners:
RMCC_2496
Fatty acid synthase.
  
 0.963
RMCC_3006
Major facilitator family transporter.
 
    0.833
RMCC_3004
Short-chain oxidoreductase.
 
    
0.782
RMCC_6372
Polyketide synthase pks13.
  
 0.771
pks5-2
Polyketide synthase pks5.
  
 0.760
RMCC_6601
Beta-ketoacyl synthase.
  
 0.760
RMCC_3003
Putative uncharacterized protein.
       0.718
RMCC_0526
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.698
RMCC_4026
Malonyl CoA-acyl carrier protein transacylase fabD.
 
  0.679
RMCC_3001
Transcriptional regulator-like protein.
       0.664
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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