STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3056Lipoprotein lppL. (337 aa)    
Predicted Functional Partners:
RMCC_0273
Ubiquinol-cytochrome C reductase qcrC.
  
 0.931
RMCC_3057
Dihydroorotate dehydrogenase.
 
     0.914
pyrD
Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.854
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
  0.777
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
  0.777
RMCC_0065
Conserved protein of unknown function.
 
   
 0.774
RMCC_4368
Conserved membrane protein of unknown function.
  
     0.769
RMCC_4528
Transmembrane protein.
  
     0.768
RMCC_2321
Membrane alanine rich protein.
  
     0.766
RMCC_4615
Transmembrane protein.
  
     0.763
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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