STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3069Mandelate racemase/muconate lactonizing enzyme. (378 aa)    
Predicted Functional Partners:
RMCC_3070
N-acyl-D-amino-acid deacylase.
 
  
  0.814
RMCC_5921
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
  
 0.734
RMCC_5678
Mandelate racemase/muconate lactonizing protein.
  
  
 
0.728
RMCC_6805
Aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.716
RMCC_5916
Sugar kinase, ribokinase family.
 
  
  0.690
gudD
(D)-glucarate dehydratase 1; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
  0.675
RMCC_3071
ABC transporter-like protein.
       0.664
hisM
ABC-type amino acid transport system, permease protein.
       0.664
RMCC_3073
Polar amino acid ABC transporter, inner membrane subunit.
       0.664
RMCC_3074
Uncharacterized protein.
       0.655
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.