STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3098Transcriptional regulator. (189 aa)    
Predicted Functional Partners:
RMCC_3097
Lysine exporter protein LysE/YggA.
 
     0.676
RMCC_0528
Putative TetR family transcriptional regulator.
  
     0.624
RMCC_4068
Transcriptional regulator, TetR family.
  
     0.614
RMCC_4858
Transcriptional regulator, TetR family.
  
     0.595
RMCC_3465
TetR family transcriptional regulator.
  
     0.558
RMCC_3096
Deazaflavin-dependent nitroreductase family protein.
       0.546
RMCC_1711
Molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.504
RMCC_2153
Oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.504
RMCC_2897
Oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.504
RMCC_5029
TetR family transcriptional regulator.
  
     0.485
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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