STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3153acyl-CoA dehydrogenase. (458 aa)    
Predicted Functional Partners:
RMCC_3154
acyl-CoA dehydrogenase.
 
  
0.987
RMCC_2059
Electron transfer flavoprotein beta subunit fixA.
 
 0.911
RMCC_2060
Electron transfer flavoprotein alpha subunit fixB.
 0.905
RMCC_1288
3-hydroxyacyl-CoA dehydrogenase.
 
 0.868
RMCC_4384
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.775
RMCC_5671
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.766
RMCC_2049
enoyl-CoA hydratase.
   
 0.763
RMCC_2520
Fatty acyl-CoA synthetase.
 
 0.761
fadD15
long-chain-fatty-acid-CoA ligase FadD15.
   
  0.726
RMCC_3986
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.724
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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