STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3159Homogentisate 1,2-dioxygenase. (367 aa)    
Predicted Functional Partners:
RMCC_0058
Sugar phosphate isomerase/epimerase.
  
 0.974
RMCC_3160
Alpha/beta hydrolase fold protein.
 
     0.958
RMCC_6450
Xylose isomerase domain protein TIM barrel.
  
 0.938
RMCC_3162
hydroxymethylglutaryl-CoA lyase.
 
   
 0.937
RMCC_3163
TetR family transcriptional regulator.
 
     0.893
RMCC_0703
Protein of unknown function.
  
 0.868
RMCC_1249
Protein of unknown function.
  
 0.868
RMCC_3166
Aminoglycoside phosphotransferase.
       0.855
RMCC_3161
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
    0.780
RMCC_3164
acyl-CoA dehydrogenase.
  
  
 0.763
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.