STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3166Aminoglycoside phosphotransferase. (108 aa)    
Predicted Functional Partners:
RMCC_3165
Aminoglycoside phosphotransferase.
      0.974
RMCC_3164
acyl-CoA dehydrogenase.
  
  0.906
RMCC_3159
Homogentisate 1,2-dioxygenase.
       0.855
RMCC_3160
Alpha/beta hydrolase fold protein.
       0.855
RMCC_3162
hydroxymethylglutaryl-CoA lyase.
       0.855
RMCC_3163
TetR family transcriptional regulator.
       0.745
RMCC_3161
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.740
RMCC_1288
3-hydroxyacyl-CoA dehydrogenase.
  
 0.681
RMCC_1971
MaoC-like dehydratase.
  
  0.667
RMCC_0544
Acetyltransferase, ribosomal protein N-acetylase.
    
  0.601
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.