STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3198long-chain-fatty-acid--CoA ligase. (511 aa)    
Predicted Functional Partners:
pks5-2
Polyketide synthase pks5.
 0.932
RMCC_6601
Beta-ketoacyl synthase.
 0.925
RMCC_1013
Polyketide synthetase mbtD.
 0.907
RMCC_1012
Peptide synthetase mbtE.
  0.894
RMCC_6372
Polyketide synthase pks13.
 0.886
RMCC_1922
acyl-CoA dehydrogenase fadE14.
 
 
 0.875
RMCC_1016
Phenyloxazoline synthase mbtB.
0.840
RMCC_1011
Peptide synthetase mbtF.
  0.838
RMCC_2496
Fatty acid synthase.
  
 
 0.811
RMCC_2520
Fatty acyl-CoA synthetase.
  
 0.800
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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