STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3200Photosystem I assembly BtpA. (273 aa)    
Predicted Functional Partners:
RMCC_3201
Short-chain dehydrogenase/reductase SDR.
       0.640
RMCC_3206
Carbohydrate kinase; Belongs to the FGGY kinase family.
 
     0.593
RMCC_3202
ABC transporter--like protein; Belongs to the ABC transporter superfamily.
       0.562
RMCC_3199
Formate/nitrite transporter family protein.
       0.531
RMCC_3203
Binding-protein-dependent transport systems inner membrane component.
       0.529
RMCC_3204
Binding-protein-dependent transport systems inner membrane component.
       0.525
RMCC_3207
Transcriptional regulator of sugar metabolism.
 
    0.510
trpA
Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
    
  0.500
RMCC_3205
Extracellular solute-binding protein.
       0.427
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.