Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCC_3205Extracellular solute-binding protein. (441 aa)    
Predicted Functional Partners:
RMCC_3203
Binding-protein-dependent transport systems inner membrane component.
 
 0.993
RMCC_3204
Binding-protein-dependent transport systems inner membrane component.
 
 0.990
RMCC_3202
ABC transporter--like protein; Belongs to the ABC transporter superfamily.
 
 0.982
RMCC_5370
Sugar-transport integral membrane protein ABC transporter sugB.
 
 0.979
RMCC_0958
Sugar-transport integral membrane protein ABC transporter uspA.
 
 0.977
RMCC_5369
Sugar-transport integral membrane protein ABC transporter sugA.
 
 0.975
RMCC_6102
Sugar ABC transporter integral membrane protein.
 
 0.974
RMCC_2529
MalF-type ABC sugar transport systems permease component.
 
 0.972
RMCC_2531
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.969
RMCC_5371
Sugar-transport ATP-binding protein ABC transporter sugC; Belongs to the ABC transporter superfamily.
 
 0.966
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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