STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3226ErfK/YbiS/YcfS/YnhG family protein. (267 aa)    
Predicted Functional Partners:
RMCC_1715
D-alanyl-D-alanine carboxypeptidase.
  
  
 0.727
RMCC_3842
Membrane carboxypeptidase.
     
 0.716
RMCC_3526
Penicillin-binding protein pbpA.
     
 0.689
RMCC_3558
Hydrolase.
 
  
 0.591
RMCC_2067
Methionine synthase, vitamin-B12 independent.
  
     0.554
RMCC_3227
DSBA oxidoreductase.
       0.512
RMCC_3590
Penicillin-binding protein.
     
 0.499
RMCC_2158
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.459
RMCC_5848
Putative secreted chitinase.
    
 0.454
RMCC_6087
Penicillin-binding protein dacB1; Belongs to the peptidase S11 family.
    
  0.454
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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