STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3231Transcriptional regulator. (121 aa)    
Predicted Functional Partners:
RMCC_3450
Peptidase M48, Ste24p.
 
 
  0.832
RMCC_2819
Peptidase M48 Ste24p.
 
 
  0.826
RMCC_3428
Zn-dependent protease with chaperone function.
 
 
  0.824
RMCC_4204
Peptidase M48, Ste24p.
 
    0.792
RMCC_0537
Zn-dependent protease with chaperone function.
 
 
  0.755
RMCC_3230
NLP/P60 protein.
       0.689
RMCC_0538
Putative transcriptional regulator.
  
     0.683
RMCC_3434
Heavy metal transport/detoxification protein.
 
  
 0.499
RMCC_4200
Heavy metal transport/detoxification protein.
 
  
 0.464
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
    
  0.449
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.