STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3299Uncharacterized protein. (102 aa)    
Predicted Functional Partners:
RMCC_3300
acetyl-CoA carboxylase beta chain.
       0.773
RMCC_3301
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.773
RMCC_5208
Flavodoxin reductase family protein.
 
 
  0.676
RMCC_3901
dhnA-type fructose-1,6-bisphosphate aldolase-like enzyme.
  
 
 0.659
RMCC_3302
Dicarboxylate carrier protein.
       0.464
RMCC_3206
Carbohydrate kinase; Belongs to the FGGY kinase family.
  
 
 0.441
xylB
Xylulokinase.
  
 
 0.441
RMCC_5478
Carbohydrate kinase FGGY.
  
 
 0.441
RMCC_0050
4-carboxymuconolactone decarboxylase.
  
 
  0.408
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.