Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_3306 | RMCC_3515 | RMCC_3306 | RMCC_3515 | Amidohydrolase. | Cyclase/dehydrase. | 0.516 |
RMCC_3306 | RMCC_5006 | RMCC_3306 | RMCC_5006 | Amidohydrolase. | Uncharacterized protein. | 0.413 |
RMCC_3306 | RMCC_5208 | RMCC_3306 | RMCC_5208 | Amidohydrolase. | Flavodoxin reductase family protein. | 0.401 |
RMCC_3306 | RMCC_5510 | RMCC_3306 | RMCC_5510 | Amidohydrolase. | TRAP C4-dicarboxylate transporter permease DctM. | 0.424 |
RMCC_3306 | tam | RMCC_3306 | RMCC_3305 | Amidohydrolase. | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.606 |
RMCC_3515 | RMCC_3306 | RMCC_3515 | RMCC_3306 | Cyclase/dehydrase. | Amidohydrolase. | 0.516 |
RMCC_5006 | RMCC_3306 | RMCC_5006 | RMCC_3306 | Uncharacterized protein. | Amidohydrolase. | 0.413 |
RMCC_5006 | RMCC_5208 | RMCC_5006 | RMCC_5208 | Uncharacterized protein. | Flavodoxin reductase family protein. | 0.614 |
RMCC_5208 | RMCC_3306 | RMCC_5208 | RMCC_3306 | Flavodoxin reductase family protein. | Amidohydrolase. | 0.401 |
RMCC_5208 | RMCC_5006 | RMCC_5208 | RMCC_5006 | Flavodoxin reductase family protein. | Uncharacterized protein. | 0.614 |
RMCC_5510 | RMCC_3306 | RMCC_5510 | RMCC_3306 | TRAP C4-dicarboxylate transporter permease DctM. | Amidohydrolase. | 0.424 |
tam | RMCC_3306 | RMCC_3305 | RMCC_3306 | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | Amidohydrolase. | 0.606 |