STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3328Anti-sigma factor antagonist. (159 aa)    
Predicted Functional Partners:
RMCC_3789
Uncharacterized protein.
  
 0.858
RMCC_4470
Stas domain-containing protein.
  
 0.858
RMCC_5992
Anti-sigma regulatory factor, serine/threonine protein kinase.
  
 0.841
RMCC_3255
ABC transporter ATP-binding protein.
   
  0.782
RMCC_4151
ABC transporter ATP-binding protein.
   
  0.782
RMCC_3973
Bacteriophytochrome.
  
 0.775
RMCC_3792
Response regulator receiver modulated serine phosphatase.
  
 0.743
RMCC_4912
ABC-type transport system, resistance to organic solvents, permease component.
   
  0.686
RMCC_3922
LuxR family transcriptional regulator.
  
  0.673
RMCC_1539
Organic solvent resistance ABC transporter permease.
   
  0.671
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.