STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3344TetR family transcriptional regulator. (212 aa)    
Predicted Functional Partners:
RMCC_3359
Hypothetical protein.
 
     0.789
RMCC_3358
Metal-dependent hydrolase-like protein.
 
     0.747
RMCC_2775
Nuclear transport factor 2.
  
     0.705
RMCC_2516
TetR family transcriptional regulator.
  
     0.677
RMCC_4329
TetR family transcriptional regulator.
  
     0.673
RMCC_3343
Rieske (2Fe-2S) domain-containing protein.
 
     0.666
RMCC_2233
Membrane protein.
  
     0.651
RMCC_1586
Hypothetical protein.
  
     0.635
RMCC_4481
TetR family transcriptional regulator.
  
     0.588
RMCC_1584
Sulfotransferase family protein.
  
     0.580
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.