Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RMCC_3370MerR family transcriptional regulator. (252 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
 0.726
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
 0.726
RMCC_1968
GAF sensor-containing diguanylate cyclase/phosphodiesterase.
    
 0.634
RMCC_0345
Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
    
 0.633
RMCC_3300
acetyl-CoA carboxylase beta chain.
   
  0.619
RMCC_5672
acetyl-CoA carboxylase carboxyl transferase beta subunit accD3.
   
  0.619
RMCC_2991
Precorrin-6y methyltransferase cobL.
     
  0.610
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.609
RMCC_3373
Putative major facilitator superfamily transport er.
 
     0.542
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.536
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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