Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3441Uncharacterized protein. (72 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.605
RMCC_3443
Regulatory protein ArsR.
       0.580
RMCC_3442
Heavy metal translocating P-type ATPase.
       0.579
RMCC_3967
1-acyl-sn-glycerol-3-phosphate acyltransferase; Bifunctionnal transmembrane phospholipid biosynthesis enzyme plsC: L-3-phosphoserine phosphatase + 1-acyl-sn-glycerol-3-phosphate acyltransferase.
   
 0.526
RMCC_0381
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.523
RMCC_0670
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.523
RMCC_5959
UDP-phosphate galactose phosphotransferase.
  
 
 0.523
RMCC_3647
Lipoprotein lprE.
    
  0.519
RMCC_6364
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.482
RMCC_6484
caiB/BaiF family protein.
     
  0.469
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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