STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3483Uncharacterized protein. (742 aa)    
Predicted Functional Partners:
RMCC_2706
Type VII secretion protein EccB.
 
 
  0.843
RMCC_3734
Secreted peptidase.
 
   0.794
RMCC_0361
Lipolytic enzyme, G-D-S-L.
  
 0.788
RMCC_2666
Uncharacterized protein.
 
   0.777
RMCC_1791
Uncharacterized protein.
  
     0.774
RMCC_1806
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.774
RMCC_1857
Uncharacterized protein.
  
     0.774
RMCC_3747
Type VII secretion protein EccE.
  
     0.774
RMCC_3749
Type VII secretion integral membrane protein Ecc D.
  
     0.774
RMCC_1383
Gp5.
 
     0.773
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.