STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3488ABC transporter ATP-binding protein. (606 aa)    
Predicted Functional Partners:
pks5-2
Polyketide synthase pks5.
  
 0.871
RMCC_6601
Beta-ketoacyl synthase.
  
 0.871
RMCC_3489
ABC transporter-like protein.
 
    
0.838
RMCC_1013
Polyketide synthetase mbtD.
  
 0.790
RMCC_2520
Fatty acyl-CoA synthetase.
  
 0.724
RMCC_2496
Fatty acid synthase.
   
 0.697
RMCC_6372
Polyketide synthase pks13.
  
 0.663
RMCC_3023
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain.
   
    0.651
RMCC_0405
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
    
 
 0.623
RMCC_6334
Superoxide dismutase Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 
 0.582
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.