STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3496Oxidoreductase. (515 aa)    
Predicted Functional Partners:
RMCC_3495
Protein of unknown function.
       0.864
RMCC_0876
Phytoene synthase.
  
 
 0.830
RMCC_3494
Peptidyl prolyl isomerase.
       0.674
RMCC_6601
Beta-ketoacyl synthase.
 
  
 0.543
RMCC_1288
3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.540
RMCC_2246
Magnesium chelatase.
  
 
 0.510
pks5-2
Polyketide synthase pks5.
    
 0.483
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.453
RMCC_4972
Type 12 methyltransferase.
  
 
  0.452
crtU
Isorenieratene synthase.
    
 0.443
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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