Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_1962 | RMCC_3499 | RMCC_1962 | RMCC_3499 | Pyruvate dehydrogenase; Belongs to the TPP enzyme family. | Type II citrate synthase; Belongs to the citrate synthase family. | 0.638 |
RMCC_1962 | RMCC_3501 | RMCC_1962 | RMCC_3501 | Pyruvate dehydrogenase; Belongs to the TPP enzyme family. | Protein of unknown function. | 0.427 |
RMCC_3046 | RMCC_3501 | RMCC_3046 | RMCC_3501 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Protein of unknown function. | 0.436 |
RMCC_3497 | RMCC_3499 | RMCC_3497 | RMCC_3499 | MarR family transcriptional regulator. | Type II citrate synthase; Belongs to the citrate synthase family. | 0.521 |
RMCC_3497 | RMCC_3501 | RMCC_3497 | RMCC_3501 | MarR family transcriptional regulator. | Protein of unknown function. | 0.413 |
RMCC_3499 | RMCC_1962 | RMCC_3499 | RMCC_1962 | Type II citrate synthase; Belongs to the citrate synthase family. | Pyruvate dehydrogenase; Belongs to the TPP enzyme family. | 0.638 |
RMCC_3499 | RMCC_3497 | RMCC_3499 | RMCC_3497 | Type II citrate synthase; Belongs to the citrate synthase family. | MarR family transcriptional regulator. | 0.521 |
RMCC_3499 | RMCC_3500 | RMCC_3499 | RMCC_3500 | Type II citrate synthase; Belongs to the citrate synthase family. | TetR family transcriptional regulator. | 0.544 |
RMCC_3499 | RMCC_3501 | RMCC_3499 | RMCC_3501 | Type II citrate synthase; Belongs to the citrate synthase family. | Protein of unknown function. | 0.509 |
RMCC_3499 | RMCC_3503 | RMCC_3499 | RMCC_3503 | Type II citrate synthase; Belongs to the citrate synthase family. | Citrate synthase 2; Belongs to the citrate synthase family. | 0.939 |
RMCC_3499 | pdxH | RMCC_3499 | RMCC_3502 | Type II citrate synthase; Belongs to the citrate synthase family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.488 |
RMCC_3500 | RMCC_3499 | RMCC_3500 | RMCC_3499 | TetR family transcriptional regulator. | Type II citrate synthase; Belongs to the citrate synthase family. | 0.544 |
RMCC_3500 | RMCC_3501 | RMCC_3500 | RMCC_3501 | TetR family transcriptional regulator. | Protein of unknown function. | 0.775 |
RMCC_3500 | RMCC_3503 | RMCC_3500 | RMCC_3503 | TetR family transcriptional regulator. | Citrate synthase 2; Belongs to the citrate synthase family. | 0.478 |
RMCC_3500 | pdxH | RMCC_3500 | RMCC_3502 | TetR family transcriptional regulator. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.516 |
RMCC_3501 | RMCC_1962 | RMCC_3501 | RMCC_1962 | Protein of unknown function. | Pyruvate dehydrogenase; Belongs to the TPP enzyme family. | 0.427 |
RMCC_3501 | RMCC_3046 | RMCC_3501 | RMCC_3046 | Protein of unknown function. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.436 |
RMCC_3501 | RMCC_3497 | RMCC_3501 | RMCC_3497 | Protein of unknown function. | MarR family transcriptional regulator. | 0.413 |
RMCC_3501 | RMCC_3499 | RMCC_3501 | RMCC_3499 | Protein of unknown function. | Type II citrate synthase; Belongs to the citrate synthase family. | 0.509 |
RMCC_3501 | RMCC_3500 | RMCC_3501 | RMCC_3500 | Protein of unknown function. | TetR family transcriptional regulator. | 0.775 |
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