STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3511Transmembrane protein. (97 aa)    
Predicted Functional Partners:
RMCC_3512
rRNA methyltransferase.
       0.887
RMCC_4720
Tuberculin related peptide.
  
     0.765
RMCC_3513
MarR family transcriptional regulator.
       0.761
RMCC_2558
Lipoprotein peptidase LpqM.
  
     0.735
RMCC_2321
Membrane alanine rich protein.
  
     0.733
RMCC_2583
LpqM.
  
     0.722
RMCC_0146
Uncharacterized protein.
  
     0.717
RMCC_0286
Hypothetical protein.
  
     0.709
RMCC_2081
Low molecular weight protein antigen 6 cfp6.
  
     0.698
RMCC_0065
Conserved protein of unknown function.
  
     0.697
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.