STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3561Uncharacterized protein. (163 aa)    
Predicted Functional Partners:
RMCC_3562
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.857
RMCC_3565
Hypothetical protein.
  
    0.762
RMCC_3566
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.749
RMCC_3564
Transmembrane protein.
       0.740
RMCC_3560
Thioredoxin reductase.
       0.655
RMCC_3559
Thioredoxin; Belongs to the thioredoxin family.
  
    0.606
RMCC_2541
Glycoside hydrolase family 10.
    
 0.488
RMCC_2212
Glycoside hydrolase family 3 domain protein; Belongs to the glycosyl hydrolase 3 family.
     
 0.475
RMCC_6622
Beta-glucosidase-like glycosyl hydrolase.
     
 0.475
RMCC_3558
Hydrolase.
       0.441
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.