STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3564Transmembrane protein. (1175 aa)    
Predicted Functional Partners:
RMCC_5549
FHA domain-containing protein.
  
 
 
 0.998
RMCC_3565
Hypothetical protein.
 
   
 0.938
RMCC_3566
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.881
RMCC_1055
DNA polymerase III subunit delta'.
 
  
 0.825
RMCC_3544
RNA-binding protein containing Zn ribbon; Belongs to the UPF0232 family.
      
 0.778
RMCC_3568
Hypothetical protein.
 
     0.771
RMCC_2803
FHA domain-containing protein.
  
 
 
 0.743
RMCC_3561
Uncharacterized protein.
       0.740
RMCC_6326
Hypothetical protein.
  
     0.737
RMCC_3872
Transmembrane ABC transporter ATP-binding protein.
  
 
 
 0.733
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.