STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3589Hypothetical protein. (143 aa)    
Predicted Functional Partners:
RMCC_3591
Transmembrane protein.
 
     0.916
RMCC_3590
Penicillin-binding protein.
     
 0.915
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.738
RMCC_2320
35 kDa alanine rich protein.
  
     0.705
RMCC_3399
Integral membrane protein.
  
     0.689
RMCC_2074
Amino acid-binding ACT.
  
     0.674
RMCC_2568
Lipoprotein lprD.
  
     0.668
RMCC_1703
Protein of unknown function.
  
     0.621
RMCC_6131
Universal stress protein UspA-like protein.
     
 0.617
RMCC_3588
Uncharacterized protein.
       0.592
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.