STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3725TetR family transcriptional regulator. (207 aa)    
Predicted Functional Partners:
RMCC_3727
Uncharacterized protein.
 
     0.653
RMCC_3726
Alpha/beta hydrolase.
       0.619
RMCC_3680
DNA-binding domain-containing protein, AraC-type.
  
     0.535
tetR-2
Tetracycline repressor protein class E.
  
     0.507
RMCC_1970
Uncharacterized protein.
  
  
 0.444
RMCC_3728
2-nitropropane dioxygenase-like enzyme.
       0.443
uvrA
Excinuclease ABC subunit A.
  
     0.418
RMCC_3110
TetR family transcriptional regulator.
  
     0.406
RMCC_4866
TetR family transcriptional regulator.
  
     0.406
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.