STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3779Orn/Lys/Arg decarboxylase. (487 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase arcA.
    
 0.895
argH
Argininosuccinate lyase.
     
 0.894
RMCC_0641
Agmatine deiminase; Belongs to the agmatine deiminase family.
    
 0.893
RMCC_4558
Agmatinase; Belongs to the arginase family.
 
  
 0.885
RMCC_5083
Agmatinase; Belongs to the arginase family.
    
 0.813
arcA-2
Arginine deiminase.
    
 0.770
lysA
Diaminopimelate decarboxylase.
 
  
 0.743
RMCC_3780
Glutamyl aminopeptidase, M42 family protein.
 
     0.702
RMCC_3781
Uncharacterized protein.
 
     0.702
lysA-2
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.644
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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