Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_0345 | RMCC_0626 | RMCC_0345 | RMCC_0626 | Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. | Crp/Fnr familytranscriptional regulator. | 0.876 |
RMCC_0345 | RMCC_3849 | RMCC_0345 | RMCC_3849 | Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. | cAMP-binding protein. | 0.865 |
RMCC_0345 | RMCC_3863 | RMCC_0345 | RMCC_3863 | Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. | Family 3 adenylate cyclase. | 0.970 |
RMCC_0345 | RMCC_3922 | RMCC_0345 | RMCC_3922 | Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. | LuxR family transcriptional regulator. | 0.997 |
RMCC_0345 | RMCC_6191 | RMCC_0345 | RMCC_6191 | Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. | Family 3 adenylate cyclase. | 0.993 |
RMCC_0626 | RMCC_0345 | RMCC_0626 | RMCC_0345 | Crp/Fnr familytranscriptional regulator. | Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. | 0.876 |
RMCC_0626 | RMCC_3849 | RMCC_0626 | RMCC_3849 | Crp/Fnr familytranscriptional regulator. | cAMP-binding protein. | 0.719 |
RMCC_0626 | RMCC_3863 | RMCC_0626 | RMCC_3863 | Crp/Fnr familytranscriptional regulator. | Family 3 adenylate cyclase. | 0.772 |
RMCC_0626 | RMCC_3922 | RMCC_0626 | RMCC_3922 | Crp/Fnr familytranscriptional regulator. | LuxR family transcriptional regulator. | 0.796 |
RMCC_0626 | RMCC_6191 | RMCC_0626 | RMCC_6191 | Crp/Fnr familytranscriptional regulator. | Family 3 adenylate cyclase. | 0.818 |
RMCC_0626 | RMCC_6293 | RMCC_0626 | RMCC_6293 | Crp/Fnr familytranscriptional regulator. | Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB. | 0.792 |
RMCC_0626 | gltB | RMCC_0626 | RMCC_0328 | Crp/Fnr familytranscriptional regulator. | Glutamate synthase (NADPH/NADH) large chain. | 0.792 |
RMCC_0626 | rpoA | RMCC_0626 | RMCC_4245 | Crp/Fnr familytranscriptional regulator. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.726 |
RMCC_0626 | rpoB | RMCC_0626 | RMCC_4150 | Crp/Fnr familytranscriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.707 |
RMCC_0626 | rpoC-2 | RMCC_0626 | RMCC_4149 | Crp/Fnr familytranscriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.700 |
RMCC_3849 | RMCC_0345 | RMCC_3849 | RMCC_0345 | cAMP-binding protein. | Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. | 0.865 |
RMCC_3849 | RMCC_0626 | RMCC_3849 | RMCC_0626 | cAMP-binding protein. | Crp/Fnr familytranscriptional regulator. | 0.719 |
RMCC_3849 | RMCC_3863 | RMCC_3849 | RMCC_3863 | cAMP-binding protein. | Family 3 adenylate cyclase. | 0.762 |
RMCC_3849 | RMCC_3922 | RMCC_3849 | RMCC_3922 | cAMP-binding protein. | LuxR family transcriptional regulator. | 0.796 |
RMCC_3849 | RMCC_6191 | RMCC_3849 | RMCC_6191 | cAMP-binding protein. | Family 3 adenylate cyclase. | 0.787 |
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