STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3885LacI family transcriptional regulator. (333 aa)    
Predicted Functional Partners:
RMCC_3886
phytanoyl-CoA dioxygenase.
 
     0.913
RMCC_3896
Sugar ABC transporter ATP-binding protein.
 
 0.847
RMCC_3897
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.829
RMCC_3888
Inositol catabolism protein.
 
    0.793
RMCC_4250
Thioredoxin reductase.
   
 0.782
RMCC_3790
Response regulator receiver protein.
   
 0.774
RMCC_3887
Myo-inositol 2-dehydrogenase.
 
    0.752
RMCC_0856
ABC transporter.
 
 0.730
frcA
Sugar ABC transporter ATPase.
 
 0.721
RMCC_0846
Monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
 0.684
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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