STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3886phytanoyl-CoA dioxygenase. (385 aa)    
Predicted Functional Partners:
RMCC_3885
LacI family transcriptional regulator.
 
     0.913
RMCC_3887
Myo-inositol 2-dehydrogenase.
 
    0.903
RMCC_3888
Inositol catabolism protein.
 
     0.888
RMCC_3889
Oxidoreductase.
 
    0.806
RMCC_3903
Acetolactate synthase; Belongs to the TPP enzyme family.
 
   
 0.702
pks5-2
Polyketide synthase pks5.
 
 0.556
RMCC_3914
Myo-inositol 2-dehydrogenase.
 
    0.551
RMCC_3896
Sugar ABC transporter ATP-binding protein.
  
     0.501
RMCC_3898
ABC transporter substrate-binding protein.
 
     0.488
RMCC_6601
Beta-ketoacyl synthase.
  
 0.483
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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