STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_3930Alkane 1-monooxygenase. (408 aa)    
Predicted Functional Partners:
rubA_1
Rubredoxin; Belongs to the rubredoxin family.
 
  
 0.816
RMCC_0024
Oxidoreductase.
 
 
 0.721
RMCC_6042
Flavodoxin oxidoreductase.
 
 
 0.717
RMCC_1653
Hemoglobine-related protein hmp.
 
 
 0.679
RMCC_5208
Flavodoxin reductase family protein.
  
 
 0.659
RMCC_0541
Alcohol dehydrogenase adhA.
     
 0.655
RMCC_6126
Alcohol dehydrogenase zinc-binding domain protein.
     
 0.655
RMCC_3929
Ferredoxin.
  
 
 0.636
RMCC_5256
Ferredoxin-like protein.
  
 
 0.636
RMCC_6625
Ferredoxin domain oxidoreductase.
  
 
 0.636
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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